Base-pair collective (covariation) scores

12 rows where conformation = "No BP", group_code = "M" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, YCons, DfDel, PNuc, Seq

molecule 2

strength 1

  • Strong · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1302 1302 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong M 31 39 5 0.14 0.07 0.0 0.07 0.68 0.81 -0.31 0.37 0.2 0.53 886
2527 2527 16S 34 1064 1192   v4 G:C No BP       Strong M 43 31 9 0.24 0.26 0.54 0.8 0.54 0.55 0.55 0.73 0.0 0.99 1150
6440 6440 23S 55 1420 1578   v4 A:U No BP       Strong M 2 2 2 1.0 0.88 0.93 1.8 0.93 0.93 -0.29 -0.31 0.0 0.04 276
6748 6748 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong M 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 -0.03 -0.06 0.0 0.0 276
7518 7518 23S 71 1935 1962   v4 G:C No BP       Strong M 16 19 6 0.34 0.54 0.74 1.28 0.74 0.86 0.91 0.73 0.0 0.99 310
7973 7973 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong M 5 2 2 0.57 0.24 0.54 0.78 0.24 0.24 -0.54 -0.42 0.0 0.13 309
7980 7980 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong M 3 2 0 0.0 0.21 0.71 0.93 0.71 0.84 -0.42 -0.42 0.01 0.12 309
7987 7987 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong M 4 7 3 0.55 0.42 0.66 1.07 0.66 0.68 -0.47 -0.54 0.0 0.13 309
8316 8316 23S 84 2296 2322   v4 U:A No BP       Strong M 4 6 3 0.6 0.4 0.85 1.25 0.85 0.9 -0.4 -0.46 0.01 0.13 309
8932 8932 23S 94 2637 2781   v4 U:A No BP       Strong M 5 8 2 0.31 0.46 0.7 1.16 0.7 0.72 -0.58 -0.62 0.12 0.13 227
9247 9247 23S 98 2796 2800   v4 U:A No BP       Strong M 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 219
9401 9401 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong M 4 3 0 0.0 0.17 0.0 0.17 0.08 0.19 0.16 -0.75 0.03 0.08 45

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");