Base-pair collective (covariation) scores

15 rows where conformation = "No BP", group_code = "E" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

molecule 2

strength 1

  • Weak · 15 ✖

group_code 1

conformation 1

  • No BP · 15 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
34 34 16S 1 13 21   v4 U:G No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.9 1.97 0.01 0.77 815
916 916 16S 15 375 388   v4 U:G No BP       Weak E 1 1 1 1.0 0.12 0.0 0.12 0.0 1.0 1.93 1.84 0.01 0.96 1026
1448 1448 16S 21 606 632   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1042
4829 4829 23S 33 687 775   v4 C:G No BP       Weak E 2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.92 1.95 0.0 0.78 205
4934 4934 23S 34 703 729   v4 U:G No BP       Weak E 16 0 0 0.0 0.01 0.0 0.01 0.49 0.99 1.0 1.96 0.0 0.78 205
2218 2218 16S 31 960 975   v4 U:A No BP       Weak E 0 4 0 0.0 0.0 0.0 0.0 0.01 1.0 1.97 1.94 0.0 0.95 1006
2225 2225 16S 31 961 974   v4 U:A No BP       Weak E 0 7 0 0.0 0.12 0.0 0.12 0.03 0.99 1.94 1.78 0.0 0.95 1007
2463 2463 16S 34 1053 1205   v4 G:U No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.99 1.98 0.0 0.94 997
2736 2736 16S 40 1158 1178   v4 C:G No BP       Weak E 5 8 1 0.15 0.06 0.0 0.06 0.81 0.84 1.71 1.23 0.01 0.96 1019
2743 2743 16S 40 1159 1177   v4 U:G No BP       Weak E 15 13 4 0.29 0.31 0.77 1.07 0.03 0.69 0.72 1.0 0.01 0.96 1018
3282 3282 16S 45 1506 1529   v4 U:G No BP       Weak E 3 2 0 0.0 0.0 0.0 0.0 0.03 1.0 1.83 1.8 0.01 0.64 684
7230 7230 23S 66 1799 1820   v4 G:U No BP       Weak E 0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 1.82 1.78 0.0 0.58 155
7503 7503 23S 69 1911 1919   v4 U:A No BP       Weak E 0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.94 0.0 0.59 155
7762 7762 23S 74 2075 2434   v4 U:A No BP       Weak E 0 1 0 0.0 0.0 0.0 0.0 0.98 0.98 2.0 1.86 0.0 0.59 155
8196 8196 23S 80 2249 2255   v4 U:G No BP       Weak E 1 0 0 0.0 0.0 0.0 0.0 0.0 0.98 1.86 2.0 0.0 0.59 155

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");