Base-pair collective (covariation) scores

12 rows where conformation = "No BP", group_code = "C" and molecule = "16S" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc, Seq

strength 3

molecule 1

  • 16S · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
33 33 16S 1 13 21   v4 U:G No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69 126
915 915 16S 15 375 388   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 164
1300 1300 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong C 8 17 4 0.32 0.12 0.0 0.12 0.05 0.79 1.55 0.98 0.0 0.9 164
1447 1447 16S 21 606 632   v4 G:U No BP       Weak C 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93 170
2133 2133 16S 30 944 1237   v4 G:C No BP       No Support C 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88 160
2217 2217 16S 31 960 975   v4 U:A No BP       Weak C 0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89 162
2224 2224 16S 31 961 974   v4 U:A No BP       Weak C 1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9 163
2462 2462 16S 34 1053 1205   v4 G:U No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9 163
2525 2525 16S 34 1064 1192   v4 G:C No BP       Strong C 1 8 1 0.22 0.06 0.0 0.06 0.9 0.96 1.95 1.4 0.0 0.9 163
2735 2735 16S 40 1158 1178   v4 C:G No BP       Weak C 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89 167
2742 2742 16S 40 1159 1177   v4 U:G No BP       Weak C 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9 167
3281 3281 16S 45 1506 1529   v4 U:G No BP       Weak C 0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59 108

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");