Base-pair collective (covariation) scores

12 rows where conformation = "No BP", group_code = "B" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, tertiary_type, Xch, Ych, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, DfDel, PNuc, Seq

molecule 2

strength 1

  • Strong · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
1298 1298 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong B 54 47 17 0.34 0.5 0.84 1.34 0.14 0.82 1.11 1.08 0.0 0.8 4697
2523 2523 16S 34 1064 1192   v4 G:C No BP       Strong B 2 24 1 0.08 0.0 0.0 0.0 0.97 0.99 1.99 1.78 0.0 0.75 4404
6436 6436 23S 55 1420 1578   v4 A:U No BP       Strong B 13 7 0 0.0 0.09 0.0 0.09 0.13 0.14 0.55 1.05 0.03 0.72 264
6744 6744 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong B 9 3 1 0.17 0.51 0.85 1.36 0.26 0.29 0.36 0.4 0.0 0.73 264
7514 7514 23S 71 1935 1962   v4 G:C No BP       Strong B 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.96 1.91 0.0 0.74 240
7969 7969 23S 76.1 2112 2169   v4 G:A No BP   3°: pseudoknot   Strong B 2 2 2 1.0 1.0 1.0 2.0 0.0 0.0 1.07 1.07 0.0 0.74 241
7976 7976 23S 76.1 2113 2170   v4 U:A No BP   3°: pseudoknot   Strong B 7 5 5 0.83 0.91 0.96 1.87 0.96 0.96 0.86 1.02 0.0 0.74 241
7983 7983 23S 76.1 2117 2172   v4 A:U No BP   3°: pseudoknot   Strong B 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.74 241
8312 8312 23S 84 2296 2322   v4 U:A No BP       Strong B 0 3 0 0.0 0.0 0.0 0.0 0.97 0.97 1.95 1.76 0.0 0.74 241
8928 8928 23S 94 2637 2781   v4 U:A No BP       Strong B 0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.96 0.0 0.65 213
9243 9243 23S 98 2796 2800   v4 U:A No BP       Strong B 5 5 1 0.2 0.39 0.8 1.19 0.8 0.82 -0.52 -0.47 0.01 0.12 218
9397 9397 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong B 12 11 7 0.61 0.85 0.93 1.77 0.0 0.05 0.9 0.89 0.0 0.63 205

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");