Base-pair collective (covariation) scores

12 rows where conformation = "No BP", group_code = 3 and molecule = "16S" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, Xch, PE, PES, Cov1, Cov3, C1+C3, WC, WCGU, XCons, YCons, DfDel, PNuc

strength 3

molecule 1

  • 16S · 12 ✖

group_code 1

conformation 1

  • No BP · 12 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code Xch Ych PE PES Cov1 Cov3 C1+C3 WC WCGU XCons YCons DfDel PNuc Seq
30 30 16S 1 13 21   v4 U:G No BP       Weak 3 4 7 1 0.18 0.05 0.0 0.05 0.0 1.0 1.93 1.91 0.0 0.43 3097
912 912 16S 15 375 388   v4 U:G No BP       Weak 3 3 21 1 0.08 0.01 0.0 0.01 0.0 0.99 1.96 1.88 0.0 0.81 5867
1297 1297 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong 3 56 55 17 0.31 0.29 0.7 0.99 0.11 0.69 1.2 0.89 0.0 0.83 5946
1444 1444 16S 21 606 632   v4 G:U No BP       Weak 3 67 128 12 0.12 0.1 0.0 0.1 0.07 0.78 0.34 0.02 0.01 0.69 6068
2130 2130 16S 30 944 1237   v4 G:C No BP       No Support 3 2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74 5326
2214 2214 16S 31 960 975   v4 U:A No BP       Weak 3 1 14 0 0.0 0.0 0.0 0.0 0.72 1.0 1.97 1.14 0.0 0.77 5561
2221 2221 16S 31 961 974   v4 U:A No BP       Weak 3 4 37 0 0.0 0.01 0.0 0.01 0.69 0.89 1.94 0.72 0.0 0.77 5546
2459 2459 16S 34 1053 1205   v4 G:U No BP       Weak 3 2 13 0 0.0 0.01 0.0 0.01 0.03 1.0 1.95 1.77 0.0 0.78 5581
2522 2522 16S 34 1064 1192   v4 G:C No BP       Strong 3 9 32 6 0.29 0.82 0.96 1.78 0.8 0.82 1.23 1.21 0.0 0.78 5606
2732 2732 16S 40 1158 1178   v4 C:G No BP       Weak 3 7 9 1 0.12 0.06 0.0 0.06 0.97 0.97 1.91 1.77 0.0 0.81 5825
2739 2739 16S 40 1159 1177   v4 U:G No BP       Weak 3 65 16 5 0.12 0.14 0.0 0.14 0.07 0.94 1.29 1.71 0.0 0.81 5822
3278 3278 16S 45 1506 1529   v4 U:G No BP       Weak 3 6 8 0 0.0 0.03 0.0 0.03 0.01 0.99 1.88 1.8 0.0 0.2 1484

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CREATE TABLE "basepair_collective_score" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "Xch" INTEGER,
   "Ych" INTEGER,
   "PE" INTEGER,
   "PES" REAL,
   "Cov1" REAL,
   "Cov3" REAL,
   "C1+C3" REAL,
   "WC" REAL,
   "WCGU" REAL,
   "XCons" REAL,
   "YCons" REAL,
   "DfDel" REAL,
   "PNuc" REAL,
   "Seq" INTEGER
);
CREATE INDEX "idx_basepair_collective_score_molecule_position_1_position_2"
    ON "basepair_collective_score" ("molecule", "position_1", "position_2");